Your eval's confidence interval assumes independent examples. Yours are clustered.

Every binomial confidence interval you have ever computed on an eval pass rate, Wald, Wilson, Clopper-Pearson, all of them, rests on one assumption: each example is an independent draw. Most eval sets violate it. You have 40 questions generated from the same 8 documents, or 200 turns from the same 30 conversations, or 150 examples that are really 50 cases with 3 paraphrases each. Those are not 200 independent observations. And when you feed a correlated set into a formula that assumes independence, the interval comes out too narrow, which means you declare differences significant that aren't. I want to walk through why, put a number on how much it matters, and show the fix, because this one is invisible: the code runs, the interval prints, and it is quietly wrong. Why clustering shrinks your real sample size Independent examples each carry their own information. Correlated examples carry overlapping information. If five questions come from the same document, and the model either understands that document or doesn't, those five outcomes move together. You did not learn five independent things about the model. You learned something closer to one and a half. The survey-statistics name for this is the design effect (Kish, "Survey Sampling," 1965). For clustered data it is approximately: Deff = 1 + (m̄ - 1) · ICC where m̄ is the average cluster size and ICC is the intra-cluster correlation, the fraction of total variance that lives between clusters rather than within them. Your effective sample size is: n_eff = n / Deff That is the number of independent examples your clustered set is actually worth. The number Take a realistic eval set: n = 200 examples, drawn from 40 source documents, so average cluster size m̄ = 5. Suppose the ICC is 0.3, which is unremarkable for "questions from the same document" (I have measured higher). Deff = 1 + (5 - 1) · 0.3 = 2.2 n_eff = 200 / 2.2 ≈ 91 Your 200-example eval is worth about 91 independent examples. The correct confidence interval